Read the gmacs.dat file

Source: R/read_GMACS_dat.R

Read the gmacs.dat file.

readGMACS.dat(path = NULL, verbose = TRUE)

Arguments

path

  • path to the gmacs.dat file

verbose

  • (TRUE/FALSE); flag to print processing information

Value

A list with the content of the gmacs.dat file.

  • DatFileName - The name of the data input file (e.g., model.dat).

  • CtlFileName - The name of the control input file (e.g., model.ctl).

  • PrjFileName - The name of the projection input file (e.g., model.prj).

  • Weight_Unit - The unit use for the weight data.

  • Number_Unit - The unit use for the numbers data.

  • Stock_name - The name of the stock considered.

  • Jitter - The jitter configuration (Yes/No).

  • sd_Jitter - The sd used in the jitter (if applicable).

  • OutVar_BRPs - Output variance for the Biological Reference Points.

  • OutVar_Recr - Output variance for the recruitment.

  • OutVar_SSB - Output variance for the Spawning Stock Biomass.

  • OutVar_Fbar - Output variance for the mean fishing mortality.

  • OutVar_DynB0 - Output variance for the dynamic B0 approach.

  • N_Year_Retro - The number of year for the retrospective analysis.

  • TurnOffPhase - The maximum number of phase(s) (i.e., stop the estimation after this phase)

  • StopAfterFnCall - The number of function call.

  • CalcRefPoints - Specify if the reference points are computed during the run.

  • UsePinFile - Use the .pin file to specify (initial) values for parameters.

  • Verbose - Verbose flag.

  • eof - Logical indicating the end of the file (used for checking the reading).

Examples

if (FALSE) {
# Stock ----
stock <- "SNOW_crab"
# read gmacs.dat ----
fileName <- "gmacs.dat"
fileName <- file.path(dir_Base, stock, fileName, fsep = fsep)
GMACSdat <- readGMACS.dat(path = fileName, verbose = TRUE)
}