For each stock considered in the analysis, this function establishes comparison tables of management quantities between different versions of GMACS.
Do_Comp(
Spc = NULL,
GMACS_version = NULL,
ASS = NULL,
AssMod_names = NULL,
Dir = NULL,
compile = NULL,
run = NULL,
LastAssDat = NULL,
ADMBpaths = NULL,
make.comp = NULL,
verbose = NULL,
out.pdf = FALSE,
cleanRun = NULL
)vector of strings specifying the name(s) of the stock considered in the analysis.
vector of strings holding the name(s) of the GMACS versions that is/are used in the analysis.
Logical. If TRUE, the outputs of the last assessment will be compared to the GMACS version(s) currently used in this analysis.
vector of strings specifying the names of the models used in the last assessment (e.g., model_16_0)
vector of strings containing the directories for all
GMACS_version used in this analysis
(0/1). If 0, GMACS is not compiled. This assumes that an executable already exists in the directory of the version(s) used in the analysis. If 1, the code will be compiled before a new run.
Logical. If TRUE the model will be executed.
Logical. If TRUE, the latest available data will be used for the analysis i.e. the model will be executed using the data stored in the the "Assessment_data" folder.
string name of 2-column text file that details the relevant paths for the R variables admbpath, gccpath, and editor.
Logical. If TRUE, comparisons will be made between the various
GMACS_version considered in the analysis.
logical: if TRUE, report the shell call an its messages to the R console.
Logical. Do you want to get the table of comparison in a pdf format?
(logical) - Specify if the `Dir` has to be cleaned after
the run. See the clean_bat() function.
For each stock considered in the analysis, this function returns a table that compares management quantities between different version of GMACS.
Do_GMACS, .buildGMACS for
building the executable.